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Time Series
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1
vote
8
replies
1.8k
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time series, block by patient, between and within comparisons limma-voom
rna-seq
time series
patient
limma-voom
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
aec
▴ 90
4
votes
7
replies
3.2k
views
LIMMA time series spline model.matrix design setup
limma
design
model.matrix
time series
splines
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
tleona3
• 0
0
votes
4
replies
1.3k
views
DESeq2 multifactor formula design
deseq2
time series
multiple factor design
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
Jane
• 0
1
vote
2
replies
1.3k
views
DESeq2: RNA-Seq time series analysis after removal of batch effect
deseq2
time series
remove batch effect
5.3 years ago
Nicola
• 0
1
vote
2
replies
2.0k
views
DeSEQ2- What is the difference between Gene Clustering and using LRT for Time Series experiment WITHOUT treatments
deseq2
Time Series
Gene Clustering
LRT
ATACseq
updated 5.2 years ago by
Michael Love
42k • written 5.2 years ago by
kaiser.karim
• 0
1
vote
2
replies
1.5k
views
Pair-wise Limma Analysis with time series data and two levels (control and treatment)
limma
microarray
time series
DEG
paired
updated 4.6 years ago by
Gordon Smyth
50k • written 4.6 years ago by
kawess
• 0
1
vote
2
replies
860
views
Time series experiment analysis in DEseq2 without T=0 and three independent experiments with linked samples
deseq2
rnaseq
repeated measures
time series
design formula
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
Dorien
▴ 10
3
votes
2
replies
2.2k
views
DESeq2 time course model
deseq2
time series
time course
updated 3.7 years ago by
Michael Love
42k • written 3.7 years ago by
bsierieb
▴ 10
7
votes
2
replies
3.2k
views
Incorporating RUVSeq factors of unwanted variation in DESeq2 time course analysis
deseq2
ruvseq
spike-in
time course
time series
updated 6.4 years ago by
davide risso
▴ 950 • written 6.4 years ago by
staceyborrego
▴ 20
0
votes
2
replies
1.0k
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
rm1238
• 0
0
votes
0
replies
675
views
clustering of scRNAseq gene expression at multiple time points
scRNA-seq
time series
3.9 years ago
Bogdan
▴ 670
1
vote
0
replies
876
views
Job:
Bioinformatics PhD: The circadian clock in the ageing plant, University of York, UK
transcriptomics
gene expression
time series
plant biology
circadian
Job
4.6 years ago
dezer
▴ 10
12 results • Page
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Comment: Genes in open chromatin region
by
danadaster
• 0
It makes me happy that I have finally found a trusted and safe online casino in Australia. I read a lot of different additional information…
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
merv
▴ 120
Thanks! I can confirm it is working now - had been broken since sometime yesterday.
Comment: Errors in chromosome annotation-biomaRt
by
landenshanie
▴ 40
Thank you, I ran your exact code and it correct for Xist, however Ddx3y is still wrongly annotated to chr13 and, like your results, Dusp1 i…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf
by
James W. MacDonald
66k
How (why?) are you loading `BiocManager` via namespace instead of loading the library? Try attaching as normal and see if that helps.
Comment: enrichGOgradient color change
by
Javier
• 0
Is it possible in some way to get it done in the same code, something like this (it doesn't work): clusterProfiler::dotplot(ego, showCateg…
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
Error when converting Seurat to SingleCellExperiment
Comment: unable to access bioconductor packages - qvalue installation failed...
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